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BREAKTHROUGH IN Wnt SIGNALING PUBLISHED!

Elizabeth Szymanski · August 23, 2023 ·

Breakthrough publication! Our recent paper in Nature Communications explains the novel structure-function mechanism by which cholesterol promotes colon cancer.  From a functional perspective, Wnt factors organize to form specialized plasma membrane (PM) domains. Dysregulation of Wnt domain structure can promote oncogenic Wnt signaling.  Here, we describe an intricate Wnt signaling-associated mechanism involving oncogenic truncated APC and the loss of PM cholesterol homeostasis, which alters the organization of Wnt signaling nanoassemblies (biomolecular condensates) and drives aberrant Wnt signaling and CRC tumorigenesis.  These highly significant findings are relevant to the nascent field of “membrane therapy”. 

Have a 2nd Cup of Coffee

nutritionlab · June 6, 2023 ·

Have a second cup: Coffee provides health benefits

Review paper outlines Texas A&M research on protective effects of coffee

APRIL 27, 2023

Having that second cup may actually be good for coffee drinkers, according to a discussion of coffee’s preventive and therapeutic benefits to human health in a recent review paper by Texas A&M University researchers.

The paper, “Health Benefits of Coffee Consumption for Cancer and Other Diseases and Mechanisms of Action,” was published recently in the International Journal of Molecular Sciences.

Some of the coffee research reported in the review was conducted by Texas A&M AgriLife Research scientists in Texas A&M’s College of Agriculture and Life Sciences Department of Nutrition and Department of Biochemistry and Biophysics in collaboration with researchers in the School of Veterinary Medicine and Biomedical Sciences Department of Veterinary Physiology and Pharmacology.

pouring a cup of coffee
Research has shown that higher coffee consumption is associated with lower rates of mortality as well as lower rates of some neurological and metabolic disorders. (Texas A&M AgriLife photo by Laura McKenzie)

About coffee

Coffee is one of the most widely consumed beverages worldwide, and epidemiological studies have associated higher coffee consumption with decreased rates of mortality, as well as decreased rates of neurological and metabolic diseases, including Parkinson’s disease and Type 2 diabetes.

“There is also evidence that higher coffee consumption is associated with lower rates of colon and rectal cancer, as well as breast, endometrial and other cancers, although there are conflicting reports on its benefit for some of these cancers,” said Stephen Safe, Ph.D., a coauthor of the review paper.

Safe is a Distinguished Professor and Regent’s Professor of toxicology in the Department of Veterinary Physiology and Pharmacology. He has conducted research on the anti-inflammatory and anti-cancer properties in coffee.

Collaborative research

Among the studies noted in the review was an examination of the “Role of the aryl hydrocarbon receptor (AhR) in mediating the effects of coffee in the colon,” originally published in Molecular Nutrition and Food Research. The research was conducted in the Safe Lab and Chapkin Lab, in collaboration with Arul Jayaraman, Ph.D., of the Texas A&M College of Engineering.

The Chapkin Laboratory is led by Robert Chapkin, Ph.D., University Distinguished Professor and Allen Endowed Chair in the Department of Nutrition and Department of Biochemistry and Biophysics. Chapkin also is the National Cancer Institute R35 Outstanding Investigator Awardee, leads the Program in Integrative Nutrition and Complex Diseases and is the recently named deputy director of the Cancer Prevention and Research Institute of Texas Regional Center of Excellence in Cancer Research at Texas A&M.

Dr. Chapkin in lab looking at sample
Robert Chapkin, Ph.D., is head of the Chapkin Laboratory, where much of the research on coffee’s health benefits has been conducted. (Texas A&M AgriLife photo by Michael Miller)

Chapkin and Laurie Davidson, Ph.D., a Department of Nutrition research scientist who works in the Chapkin Lab, were two of the primary contributors to the study.

“The mechanisms associated with the chemopreventive or chemotherapeutic effects of over 1,000 individual compounds in roasted coffee are complex and may vary with different diseases,” Chapkin said.

Some of these mechanisms may be related to pathways that target oxidative stress or pathways that induce reactive oxygen species to kill diseased cells, he said. There is also evidence for the involvement of receptors in addition to contributions from epigenetic pathways and the gut microbiome.

“As part of our study using genetically modified cell lines, mouse colonic organoids and transgenic mouse models, we wanted to further elucidate the mechanisms that would facilitate the potential future clinical applications of coffee extracts,” Chapkin said.

The review noted that although roasted coffee beans and brewed coffee contain high levels of caffeine, there are several hundred individual phytochemical-derived compounds that include chlorogenic acid/lignans, alkaloids, polyphenolics, terpenoids, melanoidins, vitamins and metals. Some of these also include flavonoid quercetin, chlorogenic acid, caffeine, the alkaloid norharman also called beta-carboline, and the terpenoid cafestrol.

Two small cups of roasted coffee beans
Although roasted coffee beans and brewed coffee contain high levels of caffeine, Texas A&M AgriLife researchers are exploring the anti-inflammatory and anti-cancer properties in coffee. (Laura McKenzie/Texas A&M AgriLife Marketing and Communications)

Coffee’s mechanisms of action

Research showed the mechanisms of action of coffee are complex and dependent on the effects of its constituents, including chlorogenic acids, polyphenolics, terpenoids, alkaloids and other phytochemicals.

“We also found evidence that the antioxidant activity of coffee, which activates the nuclear factor erythroid 2-related factor 2, or Nrf2, may be an important mechanism of action,” Davidson said. “But since Nrf2 exhibits both health-protective and drug-resistant activities, other cell context-dependent factors may also be important.”

Davidson said they also found evidence that the protective effects of coffee in the gut decreased colon cancer risk, which may be due to its activity as an aryl hydrocarbon ligand. The aryl hydrocarbon receptor, AhR, is a transcription factor that regulates gene expression.

Dr. Stephen Safe in lab
Stephen Safe, Ph.D., has investigated coffee components in relation to mechanism-based drug development. (Texas A&M AgriLife photo)

The collaborative study also demonstrated that roasted coffee-derived extracts function in part by activating the AhR. In the mouse model, coffee induced several AhR-dependent responses in the intestine. These included gene expression, inhibition of intestinal stem cell-enriched organoid growth and inhibition of intestinal barrier damage.

“Overall, these mechanisms, in concert with possible epigenetic pathways and the modulation of gut microbiota and microbial metabolites, contribute to the health benefits of higher coffee consumption,” Chapkin said.

Their research also found that some coffee components bind the orphan nuclear receptor NR4A1 to the interactions with the AhR receptor. The NH4A1 receptor is a key factor in multiple diseases, such as arthritis, inflammation, cancer and cardiovascular diseases, and a high NR4A1 expression is associated with breast cancer.

The recently published paper also refers to research from the Safe Laboratory focused on developing and discovering compounds for mechanism-based drug development to target both cancer and non-cancer endpoints.

“A major target for cancer chemotherapy includes specific protein transcription factors, the aryl hydrocarbon receptor, the estrogen receptor and orphan nuclear receptors NR4A1,” Safe said.

He said research from the Safe Lab has included collaboration with Chapkin and others to investigate the role of the aryl hydrocarbon ligand and its microbial metabolites on intestinal function and disease.

“We also have ongoing collaborations focused on endometriosis, Parkinson’s Disease, and learning and memory,” Safe said. “We have been very interested in the therapeutic impact of coffee consumption on many of these diseases and how it may improve human health.”

While much of the research conducted on the human health benefits of coffee was performed using preclinical models, Safe and Chapkin said the mechanistic findings will support future translational studies in humans.

“This suggests that clinical applications of coffee extracts, particularly for treating some cancers, should be considered,” Safe said.

Paul Schattenberg
Cell: 210-859-5752; MSTeams: 210-890-4548
paschattenberg@ag.tamu.edu
Paul is a communications and media relations specialist with Texas A&M AgriLife Communications. Based in San Antonio, Paul is responsible for writing advances, news releases and feature stories for Texas A&M AgriLife agencies, as well as providing any media relations support needed.

Texas A&M receives $6 million to create Center of Excellence in Cancer

nutritionlab · April 7, 2023 ·

Texas A&M receives $6 million to create Center of Excellence in Cancer Research

Texas A&M receives $6 million to create Center of Excellence in Cancer

Five-year grant from the Cancer Prevention and Research Institute of Texas will support infrastructure to investigate and advance cancer prevention and care
  • April 4, 2023
  • Jennifer Cain

Texas A&M University Health Science Center (Texas A&M Health) has been awarded a five-year, $6 million grant from the Cancer Prevention and Research Institute of Texas, CPRIT, to support the creation of a Texas Regional Excellence in Cancer, or TREC, Center.

The grant takes advantage of resources available to Texas A&M University to establish the infrastructure required to advance a cohesive vision to address unmet needs in cancer prevention and treatment regionally and across the nation.

The Texas A&M University Center of Excellence in Cancer will focus on mentoring early career investigators interested in cancer research, recruiting outstanding cancer researchers, and creating a highly interactive environment that promotes collaborations and incentivizes development of impactful cancer research programs of national and international relevance.

The program will draw from a talented pool of investigators from different academic units to study how biology and genes are modified by environmental and lifestyle factors to influence cancer risk and how to effectively use this knowledge to increase precision in cancer prevention and health care delivery.

Kenneth Ramos, MD, PhD, Alkek Chair in Medical Genetics, executive director of the Texas A&M Health Institute of Biosciences and Technology and assistant vice chancellor for health services at The Texas A&M University System, will serve as director of the center, and Robert Chapkin, PhD, University Distinguished Professor and Allen Endowed Chair in the College of Agriculture and Life Sciences Department of Nutrition and Department of Biochemistry and Biophysics, will serve as deputy director of this five-year grant.

The key components of the center include a Single Cell Data Analysis Core overseen by James Cai, PhD, created to facilitate single cell multi-omics research, and a Cancer Prevention Clinicogenomics Registry Core overseen by Rick Silva, PhD, to provide context for implementation of translational strategies in support of TREC projects.

Additional components include an Administrative Core, a recruitment committee and mentoring teams. Evaluation efforts will be overseen by Marcia Ory, PhD, Regents and Distinguished Professor at the Texas A&M School of Public Health.

The TREC initiative will build a critical mass of cancer researchers at Texas A&M, facilitate collaborations within and outside the institution, and support innovative cancer research that improves cancer prevention and the development of cures for these devastating diseases.

Project leaders include: 

  • Sanjukta Chakraborty, PhD, assistant professor, Department of Medical Physiology; Primary Mentor: Stephen Safe, PhD, University Distinguished Professor, Veterinary Medicine
  • Irtisha Singh, PhD, assistant professor, Department of Cell Biology and Genetics; Primary Mentor: Nancy Huang, PhD, associate professor, Institute of Biosciences and Technology
  • Shogo Sato, PhD, assistant professor, Department of Biology; Primary Mentor: Weston Porter, PhD, professor, Veterinary Medicine
  • Shreya Raghavan, PhD, assistant professor, Department of Biomedical Engineering; Primary Mentor: Tanmay Lele, PhD, Unocal Professor, Biomedical Engineering and Chemical Engineering

Kenneth Ramos, MD, PhD, Robert Chapkin, PhD, Sanjukta Chakraborty, PhD, and Tanmay Lele, PhD, are CPRIT grantees who have been awarded grants for other projects.

Media contact: Dee Dee Grays, grays@tamu.edu, 979.436.0611

Chapkin Lab Undergrad Researcher Receives Award for Poster Presentation

Elizabeth Szymanski · March 24, 2023 ·

Jennie P. Kim, a Nutritional Sciences major working on her Undergraduate Research Scholars Thesis in the Chapkin Lab (https://chapkinlab.tamu.edu) was recently awarded second place for her poster presentation in the Agricultural and Life Sciences category at the Texas A&M Student Research Week competition (https://srw.tamu.edu). Student Research Week is the largest student-run research symposium in the nation, spotlighting student research conducted at Texas A&M University. Currently, her research focuses on the effects of short-chain fatty acids (e.g., butyrate) on colonic organoid stem cell homeostasis and gene expression in high vs. normal glucose conditions. She plans to continue her involvement in undergraduate research in the Chapkin Lab and hopes to provide important contributions related to the expanding field of Precision Nutrition.

CPRIT – TREC GRANT FUNDED: Gene – environment – lifestyle interactions in cancer

Elizabeth Szymanski · February 15, 2023 ·

 

The Chapkin Lab is pleased to announce the award of a $6 million grant from Cancer Prevention and Research Institute of Texas – TREC funding to support research in “Gene – environment – lifestyle interactions in cancer”.   Dr. Robert Chapkin to serve as Deputy Director of the grant, Dr. Kenneth Ramos to serve as Director.  As part of this effort, we will establish a single-cell data science (SCDS) core at Texas A&M University in Bryan/College Station.  The SCDS core will serve as a Texas A&M Shared Resource Facility.  In terms of the complementary CPRIT grant and the SCDS core, Drs. James Cai and Yang Ni will serve as Director and co-Director, respectively.

https://www.cprit.texas.gov/grants-funded/grants/rp230204

 

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