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  1. Schoeller, A, Karki, K, Jayaraman, A, Chapkin, RS, Safe, S. Short chain fatty acids exhibit selective estrogen receptor downregulator (SERD) activity in breast cancer. Am J Cancer Res. 2022;12 (7):3422-3436. . PubMed PMID:35968335 PubMed Central PMC9360213.
  2. Park, H, Jin, UH, Martin, G, Chapkin, RS, Davidson, LA, Lee, K et al.. Structure-activity relationships among mono- and dihydroxy flavones as aryl hydrocarbon receptor (AhR) agonists or antagonists in CACO2 cells. Chem Biol Interact. 2022;365 :110067. doi: 10.1016/j.cbi.2022.110067. PubMed PMID:35917944 .
  3. Mullens, DA, Ivanov, I, Hullar, MAJ, Randolph, TW, Lampe, JW, Chapkin, RS et al.. Personalized Nutrition Using Microbial Metabolite Phenotype to Stratify Participants and Non-Invasive Host Exfoliomics Reveal the Effects of Flaxseed Lignan Supplementation in a Placebo-Controlled Crossover Trial. Nutrients. 2022;14 (12):. doi: 10.3390/nu14122377. PubMed PMID:35745107 PubMed Central PMC9230005.
  4. Osorio, D, Zhong, Y, Li, G, Xu, Q, Yang, Y, Tian, Y et al.. scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation. Patterns (N Y). 2022;3 (3):100434. doi: 10.1016/j.patter.2022.100434. PubMed PMID:35510185 PubMed Central PMC9058914.
  5. Madison, CA, Kuempel, J, Albrecht, GL, Hillbrick, L, Jayaraman, A, Safe, S et al.. 3,3'-Diindolylmethane and 1,4-dihydroxy-2-naphthoic acid prevent chronic mild stress induced depressive-like behaviors in female mice. J Affect Disord. 2022;309 :201-210. doi: 10.1016/j.jad.2022.04.106. PubMed PMID:35461819 PubMed Central PMC9153281.
  6. Turner, ND, Chapkin, RS. Biography of Joanne R Lupton (1944-2020). J Nutr. 2022;152 (4):914-916. doi: 10.1093/jn/nxac022. PubMed PMID:35091750 .
  7. Zhao, D, Farnell, MB, Kogut, MH, Genovese, KJ, Chapkin, RS, Davidson, LA et al.. From crypts to enteroids: establishment and characterization of avian intestinal organoids. Poult Sci. 2022;101 (3):101642. doi: 10.1016/j.psj.2021.101642. PubMed PMID:35016046 PubMed Central PMC8749297.
  8. Yang, Y, Osorio, D, Davidson, LA, Han, H, Mullens, DA, Jayaraman, A et al.. Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon. Cancer Prev Res (Phila). 2022;15 (1):17-28. doi: 10.1158/1940-6207.CAPR-21-0378. PubMed PMID:34815312 PubMed Central PMC8741728.
  9. Han, H, Davidson, LA, Fan, YY, Landrock, KK, Jayaraman, A, Safe, SH et al.. Loss of aryl hydrocarbon receptor suppresses the response of colonic epithelial cells to IL22 signaling by upregulating SOCS3. Am J Physiol Gastrointest Liver Physiol. 2022;322 (1):G93-G106. doi: 10.1152/ajpgi.00074.2021. PubMed PMID:34755534 PubMed Central PMC8714253.
  10. Han, H, Safe, S, Jayaraman, A, Chapkin, RS. Diet-Host-Microbiota Interactions Shape Aryl Hydrocarbon Receptor Ligand Production to Modulate Intestinal Homeostasis. Annu Rev Nutr. 2021;41 :455-478. doi: 10.1146/annurev-nutr-043020-090050. PubMed PMID:34633858 PubMed Central PMC8667662.
  11. Petrov, ME, Jiao, N, Panchanathan, SS, Reifsnider, E, Coonrod, DV, Liu, L et al.. Protocol of the Snuggle Bug/Acurrucadito Study: a longitudinal study investigating the influences of sleep-wake patterns and gut microbiome development in infancy on rapid weight gain, an early risk factor for obesity. BMC Pediatr. 2021;21 (1):374. doi: 10.1186/s12887-021-02832-8. PubMed PMID:34465311 PubMed Central PMC8405858.
  12. Chapkin, RS, Davidson, LA, Park, H, Jin, UH, Fan, YY, Cheng, Y et al.. Role of the Aryl Hydrocarbon Receptor (AhR) in Mediating the Effects of Coffee in the Colon. Mol Nutr Food Res. 2021;65 (20):e2100539. doi: 10.1002/mnfr.202100539. PubMed PMID:34406707 PubMed Central PMC8530922.
  13. Han, H, Jayaraman, A, Safe, S, Chapkin, RS. Targeting the aryl hydrocarbon receptor in stem cells to improve the use of food as medicine. Curr Stem Cell Rep. 2020;6 (4):109-118. doi: 10.1007/s40778-020-00184-0. PubMed PMID:34395177 PubMed Central PMC8362759.
  14. Fuentes, NR, Salinas, ML, Wang, X, Fan, YY, Chapkin, RS. Assessment of Plasma Membrane Fatty Acid Composition and Fluidity Using Imaging Flow Cytometry. Methods Mol Biol. 2021;2262 :251-258. doi: 10.1007/978-1-0716-1190-6_14. PubMed PMID:33977481 PubMed Central PMC8549482.
  15. Yoon, G, Davidson, LA, Goldsby, JS, Mullens, DA, Ivanov, I, Donovan, SM et al.. Exfoliated epithelial cell transcriptome reflects both small and large intestinal cell signatures in piglets. Am J Physiol Gastrointest Liver Physiol. 2021;321 (1):G41-G51. doi: 10.1152/ajpgi.00017.2021. PubMed PMID:33949197 PubMed Central PMC8321797.
  16. Lee, JH, Fang, C, Li, X, Wu, CS, Noh, JY, Ye, X et al.. GHS-R suppression in adipose tissues protects against obesity and insulin resistance by regulating adipose angiogenesis and fibrosis. Int J Obes (Lond). 2021;45 (7):1565-1575. doi: 10.1038/s41366-021-00820-7. PubMed PMID:33903722 PubMed Central PMC8238886.
  17. Safe, S, Jayaraman, A, Chapkin, RS, Howard, M, Mohankumar, K, Shrestha, R et al.. Flavonoids: structure-function and mechanisms of action and opportunities for drug development. Toxicol Res. 2021;37 (2):147-162. doi: 10.1007/s43188-020-00080-z. PubMed PMID:33868973 PubMed Central PMC8007671.
  18. Athinarayanan, S, Fan, YY, Wang, X, Callaway, E, Cai, D, Chalasani, N et al.. Fatty Acid Desaturase 1 Influences Hepatic Lipid Homeostasis by Modulating the PPARĪ±-FGF21 Axis. Hepatol Commun. 2021;5 (3):461-477. doi: 10.1002/hep4.1629. PubMed PMID:33681679 PubMed Central PMC7917273.
  19. Zhou, F, He, K, Li, Q, Chapkin, RS, Ni, Y. Bayesian biclustering for microbial metagenomic sequencing data via multinomial matrix factorization. Biostatistics. 2022;23 (3):891-909. doi: 10.1093/biostatistics/kxab002. PubMed PMID:33634824 PubMed Central PMC9291645.
  20. Fuentes, NR, Mlih, M, Wang, X, Webster, G, Cortes-Acosta, S, Salinas, ML et al.. Membrane therapy using DHA suppresses epidermal growth factor receptor signaling by disrupting nanocluster formation. J Lipid Res. 2021;62 :100026. doi: 10.1016/j.jlr.2021.100026. PubMed PMID:33515553 PubMed Central PMC7933808.
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