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Chapkin Lab

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    • NR4A1 & Arylhydrocarbon Receptor Biology
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    • Nutritional and clinical predictors of intestinal maturation and feeding tolerance in the preterm infant
    • Targeting plasma membrane spatial dynamics to suppress aberrant Wnt signaling
    • NR4A1 antagonists inhibit colorectal cancer growth and enhance immune surveillance
    • Bayesian differential causal network and clustering methods for single-cell data
    • The selective advantage of mismatch repair loss in colonic stem cells
    • Mediterranean diet and weight loss: Targeting the bile acid/gut microbiome axis to reduce colorectal cancer risk
    • Dietary and microbial predictors of childhood obesity risk
    • Diet and the colonic exfoliome: A novel, non-invasive approach to testing interventions in humans
    • Gene – environment – lifestyle interactions in cancer
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Publications

Click on the articles below. More publications by Dr. Chapkin and the Chapkin Lab Team can be found on PubMed.

  • Expression of Prooncogenic Nuclear Receptor 4A (NR4A)-Regulated Genes β1-Integrin and G9a Inhibited by Dual NR4A1/2 Ligands
    May 7, 2025 by Lei Zhang
    Bis-indole-derived compounds including 1,1-bis(3'-indolyl)-1-(3,5-disubstitutedphenyl)methane (DIM-3,5) analogs bind both orphan nuclear receptors 4A1 (NR4A1) and NR4A2, and DIM-3,5 compounds act as […]
  • Single-cell transcriptomics reveals that human milk feeding shapes neonatal immune cell interleukin signaling pathways in a nonrandomized clinical trial
    April 28, 2025 by Michael L Salinas
    CONCLUSIONS: These findings suggest that human milk downregulates peripheral immune cell cytokine transcriptional signatures linked to allergic inflammation and infection […]
  • A Chalcone Synthase-like Bacterial Protein Catalyzes Heterocyclic C-Ring Cleavage of Naringenin to Alter Bioactivity Against Nuclear Receptors in Colonic Epithelial Cells
    March 26, 2025 by Ebru Ece Gülşan
    Gut microbial metabolism of dietary flavonoids leads to a diverse array of bioactive products that are closely associated with human […]
  • Targeting polyunsaturated fatty acids desaturase FADS1 inhibits renal cancer growth via ATF3-mediated ER stress response
    March 23, 2025 by Gioia Heravi
    CONCLUSION: Our findings suggest that PUFA desaturation is crucial for rescuing cancer cells from persistent ER stress, supporting FADS1 as […]
  • Exploring cell-to-cell variability and functional insights through differentially variable gene analysis
    March 21, 2025 by Victoria Gatlin
    Single-cell RNA sequencing (scRNA-seq) has revolutionized our understanding of cellular variability by capturing gene expression profiles of individual cells. The […]
  • Perfluorooctane Sulfonate (PFOS) and Related Compounds Induce Nuclear Receptor 4A1 (NR4A1)-Dependent Carcinogenesis
    March 11, 2025 by Amanuel Hailemariam
    Polyfluoroalkyl substances (PFAS) are widely used industrial compounds that have been identified as contaminants in almost every component of the […]
  • Diet therapy abates mutant APC and KRas effects by reshaping plasma membrane cholesterol nanodomains
    December 22, 2024 by Eunjoo Kim
    Cholesterol-enriched plasma membrane domains are known to serve as signaling platforms in a diverse array of cellular processes. However, the […]
  • Graphical Dirichlet Process for Clustering Non-Exchangeable Grouped Data
    December 18, 2024 by Arhit Chakrabarti
    We consider the problem of clustering grouped data with possibly non-exchangeable groups whose dependencies can be characterized by a known […]
  • 1,4-dihydroxy-2-naphthoic acid prevents 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-induced motor function deficits
    December 11, 2024 by Caitlin A Madison
    Parkinson's disease (PD), characterized by death of dopaminergic neurons in the substantia nigra, is the second most prevalent progressive neurodegenerative […]
  • Involvement of Intestinal Epithelium Aryl Hydrocarbon Receptor Expression and 3, 3'-Diindolylmethane in Colonic Tertiary Lymphoid Tissue Formation
    September 28, 2024 by Erika L Garcia-Villatoro
    Tertiary lymphoid tissues (TLTs) are adaptive immune structures that develop during chronic inflammation and may worsen or lessen disease outcomes […]
  • TCDD (2,3,7,8-tetrachlorodibenzo-p-dioxin) induces depression-like phenotype
    June 5, 2024 by Roanna A Debler
    The etiology of major depressive disorder (MDD) remains poorly understood. Our previous studies suggest a role for the aryl hydrocarbon […]
  • Targeting Fatty Acid Desaturase I Inhibits Renal Cancer Growth Via ATF3-mediated ER Stress Response
    April 8, 2024 by Gioia Heravi
    Monounsaturated fatty acids (MUFAs) play a pivotal role in maintaining endoplasmic reticulum (ER) homeostasis, an emerging hallmark of cancer. However, […]
  • A Unified Bayesian Framework for Bi-overlapping-Clustering Multi-omics Data via Sparse Matrix Factorization
    January 5, 2024 by Fangting Zhou
    The advances of modern sequencing techniques have generated an unprecedented amount of multi-omics data which provide great opportunities to quantitatively […]
  • Interfacial Electromigration for Analysis of Biofluid Lipids in Small Volumes
    December 5, 2023 by Madison E Edwards
    Lipids are important biomarkers within the field of disease diagnostics and can serve as indicators of disease progression and predictors […]
  • Bis-indole-derived NR4A1 antagonists inhibit colon tumor and splenic growth and T-cell exhaustion
    October 17, 2023 by Kumaravel Mohankumar
    There is evidence that the orphan nuclear receptor 4A1 (NR4A1, Nur77) is overexpressed in exhausted CD8 + T cells and […]

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